We have performed mid-IR photometry of the young open cluster NGC 2264 using the images obtained with the Spitzer Space Telescope Infrared Array Camera and Multiband Imaging Photometer for Spitzer instruments and presented a normalized classification scheme of young stellar objects in various color-color diagrams to make full use of the information from multicolor photometry. These results are compared with the classification scheme based on the slope of the spectral energy distribution (SED). From the spatial distributions of Class I and II stars, we have identified two subclusterings of Class I objects in the CONE region of Sung et al. (Cat. J/AJ/135/441). The disked stars in the other star-forming region S Mon are mostly Class II objects. In addition, we have derived a somewhat higher value of the primordial disk fraction for NGC 2264 members located below the main pre-main-sequence locus (so-called BMS stars). This result supports the idea that BMS stars are young stars with nearly edge-on disks.